HL_6Y69_024

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUCACGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_024 not in the Motif Atlas

Homologous match to HL_9DFE_024

Geometric discrepancy: 0.5981

The information below is about HL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

6Y69|1|A|G|883
6Y69|1|A|U|884
6Y69|1|A|C|885
6Y69|1|A|A|886
6Y69|1|A|C|890
6Y69|1|A|G|891
6Y69|1|A|A|892
6Y69|1|A|C|893

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain m

30S ribosomal protein S13