HL_6Y69_025
3D structure
- PDB id
- 6Y69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUGCUAACGU
- Length
- 10 nucleotides
- Bulged bases
- 6Y69|1|A|U|958, 6Y69|1|A|C|961
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Y69_025 not in the Motif Atlas
- Geometric match to HL_3RG5_006
- Geometric discrepancy: 0.2616
- The information below is about HL_3RG5_006
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- tRNA anticodon loop
- Motif group
- HL_87268.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 15
Unit IDs
6Y69|1|A|G|954
6Y69|1|A|U|955
6Y69|1|A|G|956
6Y69|1|A|C|957
6Y69|1|A|U|958
6Y69|1|A|A|959
6Y69|1|A|A|960
6Y69|1|A|C|961
6Y69|1|A|G|962
6Y69|1|A|U|963
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain M
- 50S ribosomal protein L16
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