HL_6Y69_081

3D structure

PDB id

6Y69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6Y69|1|a|U|467

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y69_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.153

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Y69|1|a|G|462
6Y69|1|a|U|463
6Y69|1|a|U|464
6Y69|1|a|A|465
6Y69|1|a|A|466
6Y69|1|a|U|467
6Y69|1|a|A|468
6Y69|1|a|C|469
6Y69|1|a|C|470

Current chains

Chain a

16S ribosomal RNA

Nearby chains