3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GGUAAACUCC
Length
10 nucleotides
Bulged bases
6Y6X|1|L5|G|315, 6Y6X|1|L5|U|316
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y6X_009 not in the Motif Atlas
Homologous match to HL_8C3A_009
Geometric discrepancy: 0.1678
The information below is about HL_8C3A_009
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_15076.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
10

Unit IDs

6Y6X|1|L5|G|314
6Y6X|1|L5|G|315
6Y6X|1|L5|U|316
6Y6X|1|L5|A|317
6Y6X|1|L5|A|318
6Y6X|1|L5|A|319
6Y6X|1|L5|C|320
6Y6X|1|L5|U|321
6Y6X|1|L5|C|322
6Y6X|1|L5|C|323

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LN
60S ribosomal protein L15
Chain La
60S ribosomal protein L27a
Chain Li
60S ribosomal protein L36
Chain Lo
60S ribosomal protein L36a

Coloring options:


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