HL_6Y6X_014

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GACUGUCCCCAGU

Length

13 nucleotides

Bulged bases

6Y6X|1|L5|G|1178, 6Y6X|1|L5|U|1179

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|G|1174
6Y6X|1|L5|A|1175
6Y6X|1|L5|C|1176
6Y6X|1|L5|U|1177
6Y6X|1|L5|G|1178
6Y6X|1|L5|U|1179
6Y6X|1|L5|C|1180
6Y6X|1|L5|C|1181
6Y6X|1|L5|C|1182
6Y6X|1|L5|C|1183
6Y6X|1|L5|A|1184
6Y6X|1|L5|G|1185
6Y6X|1|L5|U|1186

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain L7

5S ribosomal RNA; 5S rRNA

Chain LD

60S ribosomal protein L5

Chain LI

60S ribosomal protein L10-like