HL_6Y6X_031

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGCCCGG

Length

8 nucleotides

Bulged bases

6Y6X|1|L5|C|2250

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_031 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3772

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6Y6X|1|L5|C|2110
6Y6X|1|L5|G|2111
6Y6X|1|L5|G|2112
6Y6X|1|L5|C|2113
6Y6X|1|L5|C|2249
6Y6X|1|L5|C|2250
6Y6X|1|L5|G|2251
6Y6X|1|L5|G|2252

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LE

60S ribosomal protein L6