3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
AGCAGUU
Length
7 nucleotides
Bulged bases
6Y6X|1|L5|G|2421, 6Y6X|1|L5|U|2425
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y6X_034 not in the Motif Atlas
Homologous match to HL_5TBW_032
Geometric discrepancy: 0.1689
The information below is about HL_5TBW_032
Detailed Annotation
Pseudoknot geometry with 3' bulge
Broad Annotation
No text annotation
Motif group
HL_40756.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
14

Unit IDs

6Y6X|1|L5|A|2420
6Y6X|1|L5|G|2421
6Y6X|1|L5|C|2422
6Y6X|1|L5|A|2423
6Y6X|1|L5|G|2424
6Y6X|1|L5|U|2425
6Y6X|1|L5|U|2426

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LP
60S ribosomal protein L17
Chain LR
60S ribosomal protein L19
Chain Ll
60S ribosomal protein L39

Coloring options:


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