HL_6Y6X_050

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

6Y6X|1|L5|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_050 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.1362

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

6Y6X|1|L5|C|3668
6Y6X|1|L5|G|3669
6Y6X|1|L5|C|3670
6Y6X|1|L5|G|3671
6Y6X|1|L5|G|3672
6Y6X|1|L5|C|3673
6Y6X|1|L5|G|3674

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LA

60S ribosomal protein L8

Chain LN

60S ribosomal protein L15