HL_6Y6X_055

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

AGACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUUU

Length

68 nucleotides

Bulged bases

6Y6X|1|L5|A|3962, 6Y6X|1|L5|C|4038, 6Y6X|1|L5|U|4044, 6Y6X|1|L5|A|4053, 6Y6X|1|L5|C|4054, 6Y6X|1|L5|U|4058

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Y6X|1|L5|A|3945
6Y6X|1|L5|G|3946
6Y6X|1|L5|A|3947
6Y6X|1|L5|C|3948
6Y6X|1|L5|A|3949
6Y6X|1|L5|U|3950
6Y6X|1|L5|G|3951
6Y6X|1|L5|A|3952
6Y6X|1|L5|G|3953
6Y6X|1|L5|A|3954
6Y6X|1|L5|G|3955
6Y6X|1|L5|G|3956
6Y6X|1|L5|U|3957
6Y6X|1|L5|G|3958
6Y6X|1|L5|U|3959
6Y6X|1|L5|A|3960
6Y6X|1|L5|G|3961
6Y6X|1|L5|A|3962
6Y6X|1|L5|A|3963
6Y6X|1|L5|U|3964
6Y6X|1|L5|A|3965
6Y6X|1|L5|A|3966
6Y6X|1|L5|G|3967
6Y6X|1|L5|U|3968
6Y6X|1|L5|G|3969
6Y6X|1|L5|G|3970
6Y6X|1|L5|G|3971
6Y6X|1|L5|A|3972
6Y6X|1|L5|G|3973
6Y6X|1|L5|G|3974
6Y6X|1|L5|C|3975
6Y6X|1|L5|C|3976
6Y6X|1|L5|C|3977
6Y6X|1|L5|G|4034
6Y6X|1|L5|G|4035
6Y6X|1|L5|G|4036
6Y6X|1|L5|C|4037
6Y6X|1|L5|C|4038
6Y6X|1|L5|G|4039
6Y6X|1|L5|C|4040
6Y6X|1|L5|C|4041
6Y6X|1|L5|G|4042
6Y6X|1|L5|G|4043
6Y6X|1|L5|U|4044
6Y6X|1|L5|G|4045
6Y6X|1|L5|A|4046
6Y6X|1|L5|A|4047
6Y6X|1|L5|A|4048
6Y6X|1|L5|U|4049
6Y6X|1|L5|A|4050
6Y6X|1|L5|C|4051
6Y6X|1|L5|C|4052
6Y6X|1|L5|A|4053
6Y6X|1|L5|C|4054
6Y6X|1|L5|U|4055
6Y6X|1|L5|A|4056
6Y6X|1|L5|C|4057
6Y6X|1|L5|U|4058
6Y6X|1|L5|C|4059
6Y6X|1|L5|U|4060
6Y6X|1|L5|G|4061
6Y6X|1|L5|A|4062
6Y6X|1|L5|U|4063
6Y6X|1|L5|C|4064
6Y6X|1|L5|G|4065
6Y6X|1|L5|U|4066
6Y6X|1|L5|U|4067
6Y6X|1|L5|U|4068

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain Lz

60S ribosomal protein L10a