3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CAGAAGGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6Y6X_061 not in the Motif Atlas
Homologous match to HL_8C3A_058
Geometric discrepancy: 0.0991
The information below is about HL_8C3A_058
Detailed Annotation
Pseudoknot geometry
Broad Annotation
No text annotation
Motif group
HL_93324.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
26

Unit IDs

6Y6X|1|L5|C|4270
6Y6X|1|L5|A|4271
6Y6X|1|L5|G|4272
6Y6X|1|L5|A|4273
6Y6X|1|L5|A|4274
6Y6X|1|L5|G|4275
6Y6X|1|L5|G|4276
6Y6X|1|L5|G|4277

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain LI
60S ribosomal protein L10-like
Chain LT
60S ribosomal protein L21
Chain Lo
60S ribosomal protein L36a

Coloring options:


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