HL_6Y6X_063

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_063 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0641

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Y6X|1|L5|U|4321
6Y6X|1|L5|G|4322
6Y6X|1|L5|A|4323
6Y6X|1|L5|A|4324
6Y6X|1|L5|A|4325
6Y6X|1|L5|G|4326

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LD

60S ribosomal protein L5

Chain LT

60S ribosomal protein L21