HL_6Y6X_071

3D structure

PDB id

6Y6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Tetracenomycin X bound to the human ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

6Y6X|1|L5|G|4694, 6Y6X|1|L5|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Y6X_071 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0558

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

6Y6X|1|L5|C|4688
6Y6X|1|L5|U|4689
6Y6X|1|L5|G|4690
6Y6X|1|L5|A|4691
6Y6X|1|L5|A|4692
6Y6X|1|L5|C|4693
6Y6X|1|L5|G|4694
6Y6X|1|L5|C|4695
6Y6X|1|L5|C|4696
6Y6X|1|L5|U|4697
6Y6X|1|L5|C|4698
6Y6X|1|L5|U|4699
6Y6X|1|L5|A|4700
6Y6X|1|L5|A|4701
6Y6X|1|L5|G|4702

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-60S ribosomal protein L40