3D structure

PDB id
6Y6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracenomycin X bound to the human ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
GACAUGAGAGGUGUAGAAUAAGUGGGAGGCCCCCGGCGCCCCCCCGGUGUCCCCGCGAGGGGCCCGGGGCGGGGUCCGCCGGCCCUGCGGGCCGCCGGUGAAAUACCACUACUCUGAUCGUU
Length
122 nucleotides
Bulged bases
6Y6X|1|L5|A|3947, 6Y6X|1|L5|A|3962, 6Y6X|1|L5|G|3969, 6Y6X|1|L5|C|3976, 6Y6X|1|L5|C|3977, 6Y6X|1|L5|C|3978, 6Y6X|1|L5|C|3979, 6Y6X|1|L5|G|3980, 6Y6X|1|L5|G|3981, 6Y6X|1|L5|C|3982, 6Y6X|1|L5|G|3983, 6Y6X|1|L5|C|3984, 6Y6X|1|L5|C|3985, 6Y6X|1|L5|C|3986, 6Y6X|1|L5|C|3987, 6Y6X|1|L5|C|3988, 6Y6X|1|L5|C|3989, 6Y6X|1|L5|C|3990, 6Y6X|1|L5|G|3991, 6Y6X|1|L5|G|3992, 6Y6X|1|L5|U|3993, 6Y6X|1|L5|G|3994, 6Y6X|1|L5|U|3995, 6Y6X|1|L5|C|3996, 6Y6X|1|L5|C|3997, 6Y6X|1|L5|C|3998, 6Y6X|1|L5|C|3999, 6Y6X|1|L5|G|4000, 6Y6X|1|L5|C|4001, 6Y6X|1|L5|G|4002, 6Y6X|1|L5|A|4003, 6Y6X|1|L5|G|4004, 6Y6X|1|L5|G|4005, 6Y6X|1|L5|G|4006, 6Y6X|1|L5|G|4007, 6Y6X|1|L5|C|4008, 6Y6X|1|L5|C|4009, 6Y6X|1|L5|C|4010, 6Y6X|1|L5|G|4011, 6Y6X|1|L5|G|4012, 6Y6X|1|L5|G|4013, 6Y6X|1|L5|G|4014, 6Y6X|1|L5|C|4015, 6Y6X|1|L5|G|4016, 6Y6X|1|L5|G|4017, 6Y6X|1|L5|G|4018, 6Y6X|1|L5|G|4019, 6Y6X|1|L5|U|4020, 6Y6X|1|L5|C|4021, 6Y6X|1|L5|C|4022, 6Y6X|1|L5|G|4023, 6Y6X|1|L5|C|4024, 6Y6X|1|L5|C|4025, 6Y6X|1|L5|G|4026, 6Y6X|1|L5|G|4027, 6Y6X|1|L5|C|4028, 6Y6X|1|L5|C|4029, 6Y6X|1|L5|C|4030, 6Y6X|1|L5|U|4031, 6Y6X|1|L5|G|4032, 6Y6X|1|L5|C|4033, 6Y6X|1|L5|G|4034, 6Y6X|1|L5|G|4035, 6Y6X|1|L5|C|4038, 6Y6X|1|L5|G|4039, 6Y6X|1|L5|G|4042, 6Y6X|1|L5|U|4044, 6Y6X|1|L5|A|4047, 6Y6X|1|L5|C|4051, 6Y6X|1|L5|C|4052, 6Y6X|1|L5|A|4053, 6Y6X|1|L5|C|4054, 6Y6X|1|L5|U|4058, 6Y6X|1|L5|C|4059
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6Y6X|1|L5|G|3946
6Y6X|1|L5|A|3947
6Y6X|1|L5|C|3948
6Y6X|1|L5|A|3949
6Y6X|1|L5|U|3950
6Y6X|1|L5|G|3951
6Y6X|1|L5|A|3952
6Y6X|1|L5|G|3953
6Y6X|1|L5|A|3954
6Y6X|1|L5|G|3955
6Y6X|1|L5|G|3956
6Y6X|1|L5|U|3957
6Y6X|1|L5|G|3958
6Y6X|1|L5|U|3959
6Y6X|1|L5|A|3960
6Y6X|1|L5|G|3961
6Y6X|1|L5|A|3962
6Y6X|1|L5|A|3963
6Y6X|1|L5|U|3964
6Y6X|1|L5|A|3965
6Y6X|1|L5|A|3966
6Y6X|1|L5|G|3967
6Y6X|1|L5|U|3968
6Y6X|1|L5|G|3969
6Y6X|1|L5|G|3970
6Y6X|1|L5|G|3971
6Y6X|1|L5|A|3972
6Y6X|1|L5|G|3973
6Y6X|1|L5|G|3974
6Y6X|1|L5|C|3975
6Y6X|1|L5|C|3976
6Y6X|1|L5|C|3977
6Y6X|1|L5|C|3978
6Y6X|1|L5|C|3979
6Y6X|1|L5|G|3980
6Y6X|1|L5|G|3981
6Y6X|1|L5|C|3982
6Y6X|1|L5|G|3983
6Y6X|1|L5|C|3984
6Y6X|1|L5|C|3985
6Y6X|1|L5|C|3986
6Y6X|1|L5|C|3987
6Y6X|1|L5|C|3988
6Y6X|1|L5|C|3989
6Y6X|1|L5|C|3990
6Y6X|1|L5|G|3991
6Y6X|1|L5|G|3992
6Y6X|1|L5|U|3993
6Y6X|1|L5|G|3994
6Y6X|1|L5|U|3995
6Y6X|1|L5|C|3996
6Y6X|1|L5|C|3997
6Y6X|1|L5|C|3998
6Y6X|1|L5|C|3999
6Y6X|1|L5|G|4000
6Y6X|1|L5|C|4001
6Y6X|1|L5|G|4002
6Y6X|1|L5|A|4003
6Y6X|1|L5|G|4004
6Y6X|1|L5|G|4005
6Y6X|1|L5|G|4006
6Y6X|1|L5|G|4007
6Y6X|1|L5|C|4008
6Y6X|1|L5|C|4009
6Y6X|1|L5|C|4010
6Y6X|1|L5|G|4011
6Y6X|1|L5|G|4012
6Y6X|1|L5|G|4013
6Y6X|1|L5|G|4014
6Y6X|1|L5|C|4015
6Y6X|1|L5|G|4016
6Y6X|1|L5|G|4017
6Y6X|1|L5|G|4018
6Y6X|1|L5|G|4019
6Y6X|1|L5|U|4020
6Y6X|1|L5|C|4021
6Y6X|1|L5|C|4022
6Y6X|1|L5|G|4023
6Y6X|1|L5|C|4024
6Y6X|1|L5|C|4025
6Y6X|1|L5|G|4026
6Y6X|1|L5|G|4027
6Y6X|1|L5|C|4028
6Y6X|1|L5|C|4029
6Y6X|1|L5|C|4030
6Y6X|1|L5|U|4031
6Y6X|1|L5|G|4032
6Y6X|1|L5|C|4033
6Y6X|1|L5|G|4034
6Y6X|1|L5|G|4035
6Y6X|1|L5|G|4036
6Y6X|1|L5|C|4037
6Y6X|1|L5|C|4038
6Y6X|1|L5|G|4039
6Y6X|1|L5|C|4040
6Y6X|1|L5|C|4041
6Y6X|1|L5|G|4042
6Y6X|1|L5|G|4043
6Y6X|1|L5|U|4044
6Y6X|1|L5|G|4045
6Y6X|1|L5|A|4046
6Y6X|1|L5|A|4047
6Y6X|1|L5|A|4048
6Y6X|1|L5|U|4049
6Y6X|1|L5|A|4050
6Y6X|1|L5|C|4051
6Y6X|1|L5|C|4052
6Y6X|1|L5|A|4053
6Y6X|1|L5|C|4054
6Y6X|1|L5|U|4055
6Y6X|1|L5|A|4056
6Y6X|1|L5|C|4057
6Y6X|1|L5|U|4058
6Y6X|1|L5|C|4059
6Y6X|1|L5|U|4060
6Y6X|1|L5|G|4061
6Y6X|1|L5|A|4062
6Y6X|1|L5|U|4063
6Y6X|1|L5|C|4064
6Y6X|1|L5|G|4065
6Y6X|1|L5|U|4066
6Y6X|1|L5|U|4067

Current chains

Chain L5
28S ribosomal RNA

Nearby chains

Chain Li
60S ribosomal protein L36
Chain Lz
60S ribosomal protein L10a

Coloring options:

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