HL_6YAL_005

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

6YAL|1|2|C|72, 6YAL|1|2|G|75, 6YAL|1|2|U|76

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_005 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.2523

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6YAL|1|2|C|69
6YAL|1|2|G|70
6YAL|1|2|G|71
6YAL|1|2|C|72
6YAL|1|2|C|73
6YAL|1|2|G|74
6YAL|1|2|G|75
6YAL|1|2|U|76
6YAL|1|2|A|77
6YAL|1|2|C|78
6YAL|1|2|A|79
6YAL|1|2|G|80

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain I

40S ribosomal protein eS6