HL_6YAL_020

3D structure

PDB id

6YAL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage initiation complex with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGUUCAAAG

Length

9 nucleotides

Bulged bases

6YAL|1|2|G|817

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAL_020 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.1976

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6YAL|1|2|U|816
6YAL|1|2|G|817
6YAL|1|2|U|818
6YAL|1|2|U|819
6YAL|1|2|C|820
6YAL|1|2|A|821
6YAL|1|2|A|822
6YAL|1|2|A|823
6YAL|1|2|G|824

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein eS4

Chain L

40S ribosomal protein uS4

Chain a

40S ribosomal protein eS24