HL_6YAM_005
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- CGGCCGGUACAG
- Length
- 12 nucleotides
- Bulged bases
- 6YAM|1|2|C|72, 6YAM|1|2|G|75, 6YAM|1|2|U|76
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAM_005 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.2523
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YAM|1|2|C|69
6YAM|1|2|G|70
6YAM|1|2|G|71
6YAM|1|2|C|72
6YAM|1|2|C|73
6YAM|1|2|G|74
6YAM|1|2|G|75
6YAM|1|2|U|76
6YAM|1|2|A|77
6YAM|1|2|C|78
6YAM|1|2|A|79
6YAM|1|2|G|80
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain I
- 40S ribosomal protein eS6
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