HL_6YAM_017

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_017 not in the Motif Atlas

Geometric match to HL_4V88_199

Geometric discrepancy: 0.1726

The information below is about HL_4V88_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

6YAM|1|2|A|559
6YAM|1|2|C|560
6YAM|1|2|U|561
6YAM|1|2|U|562
6YAM|1|2|U|563
6YAM|1|2|A|564
6YAM|1|2|A|565
6YAM|1|2|A|566
6YAM|1|2|U|567
6YAM|1|2|C|568
6YAM|1|2|C|569
6YAM|1|2|U|570
6YAM|1|2|U|571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain L

40S ribosomal protein uS4

Chain a

40S ribosomal protein eS24