HL_6YAM_017
3D structure
- PDB id
- 6YAM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.6 Å
Loop
- Sequence
- ACUUUAAAUCCUU
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAM_017 not in the Motif Atlas
- Geometric match to HL_4V88_199
- Geometric discrepancy: 0.1726
- The information below is about HL_4V88_199
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_05304.1
- Basepair signature
- cWW-cWW-F-F-tSH-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
6YAM|1|2|A|559
6YAM|1|2|C|560
6YAM|1|2|U|561
6YAM|1|2|U|562
6YAM|1|2|U|563
6YAM|1|2|A|564
6YAM|1|2|A|565
6YAM|1|2|A|566
6YAM|1|2|U|567
6YAM|1|2|C|568
6YAM|1|2|C|569
6YAM|1|2|U|570
6YAM|1|2|U|571
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain L
- 40S ribosomal protein uS4
- Chain a
- 40S ribosomal protein eS24
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