3D structure

PDB id
6YAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.6 Å

Loop

Sequence
UGCAAA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YAM_028 not in the Motif Atlas
Homologous match to HL_4V88_211
Geometric discrepancy: 0.1754
The information below is about HL_4V88_211
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

6YAM|1|2|U|1174
6YAM|1|2|G|1175
6YAM|1|2|C|1176
6YAM|1|2|A|1177
6YAM|1|2|A|1178
6YAM|1|2|A|1179

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain l
60s ribosomal protein l41

Coloring options:


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