HL_6YAM_034

3D structure

PDB id

6YAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex (LS48S+eIF3 IC) with beta-globin mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CGUUCAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAM_034 not in the Motif Atlas

Homologous match to HL_4V88_217

Geometric discrepancy: 0.376

The information below is about HL_4V88_217

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_67216.9

Basepair signature

cWW-cWW-F-tSH

Number of instances in this motif group

9

Unit IDs

6YAM|1|2|C|1456
6YAM|1|2|G|1457
6YAM|1|2|U|1458
6YAM|1|2|U|1459
6YAM|1|2|C|1460
6YAM|1|2|A|1461
6YAM|1|2|G|1462

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein eS17

Chain g

ribosomal protein RACK1

Chain m

eukaryotic translation initiation factor 3 subunit d