HL_6YAN_021

3D structure

PDB id

6YAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mammalian 48S late-stage translation initiation complex with histone 4 mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.48 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6YAN|1|2|C|836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YAN_021 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.3507

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6YAN|1|2|C|829
6YAN|1|2|C|830
6YAN|1|2|C|831
6YAN|1|2|G|832
6YAN|1|2|A|833
6YAN|1|2|G|834
6YAN|1|2|C|835
6YAN|1|2|C|836
6YAN|1|2|G|837

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

40S ribosomal protein S4

Chain L

Ribosomal protein S9 (Predicted)

Chain a

40S ribosomal protein S24