3D structure

PDB id
6YAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
3.48 Å

Loop

Sequence
GUCAUAAGC
Length
9 nucleotides
Bulged bases
6YAN|1|2|A|1658, 6YAN|1|2|G|1660
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6YAN_037 not in the Motif Atlas
Homologous match to HL_4V88_220
Geometric discrepancy: 0.2795
The information below is about HL_4V88_220
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_01927.1
Basepair signature
cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

6YAN|1|2|G|1653
6YAN|1|2|U|1654
6YAN|1|2|C|1655
6YAN|1|2|A|1656
6YAN|1|2|U|1657
6YAN|1|2|A|1658
6YAN|1|2|A|1659
6YAN|1|2|G|1660
6YAN|1|2|C|1661

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain S
ribosomal protein uS9
Chain V
40S ribosomal protein eS19
Chain W
Ribosomal_S10 domain-containing protein
Chain e
ribosomal protein uS14

Coloring options:


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