HL_6YAN_037
3D structure
- PDB id
- 6YAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian 48S late-stage translation initiation complex with histone 4 mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.48 Å
Loop
- Sequence
- GUCAUAAGC
- Length
- 9 nucleotides
- Bulged bases
- 6YAN|1|2|A|1658, 6YAN|1|2|G|1660
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YAN_037 not in the Motif Atlas
- Homologous match to HL_4V88_220
- Geometric discrepancy: 0.2795
- The information below is about HL_4V88_220
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_01927.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
6YAN|1|2|G|1653
6YAN|1|2|U|1654
6YAN|1|2|C|1655
6YAN|1|2|A|1656
6YAN|1|2|U|1657
6YAN|1|2|A|1658
6YAN|1|2|A|1659
6YAN|1|2|G|1660
6YAN|1|2|C|1661
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain S
- ribosomal protein uS9
- Chain V
- 40S ribosomal protein eS19
- Chain W
- Ribosomal_S10 domain-containing protein
- Chain e
- ribosomal protein uS14
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