HL_6YBV_002

3D structure

PDB id

6YBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - eIF2-TC

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCCCAUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBV_002 not in the Motif Atlas

Homologous match to HL_9DFC_104

Geometric discrepancy: 0.1454

The information below is about HL_9DFC_104

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

6YBV|1|w|G|30
6YBV|1|w|C|31
6YBV|1|w|C|32
6YBV|1|w|C|33
6YBV|1|w|A|34
6YBV|1|w|U|35
6YBV|1|w|A|36
6YBV|1|w|A|37
6YBV|1|w|C|38

Current chains

Chain w

Initiator methionine tRNA

Nearby chains

Chain k

mRNA

Chain r

Eukaryotic translation initiation factor 2 subunit 1