HL_6YBW_002

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCCGGUACAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBW_002 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.3615

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

6YBW|1|A|C|69
6YBW|1|A|G|70
6YBW|1|A|G|71
6YBW|1|A|C|72
6YBW|1|A|C|73
6YBW|1|A|G|74
6YBW|1|A|G|75
6YBW|1|A|U|76
6YBW|1|A|A|77
6YBW|1|A|C|78
6YBW|1|A|A|79
6YBW|1|A|G|80

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6