HL_6YBW_018

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCGAGCCG

Length

9 nucleotides

Bulged bases

6YBW|1|A|G|836, 6YBW|1|A|G|838, 6YBW|1|A|C|840

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YBW_018 not in the Motif Atlas

Homologous match to HL_9H3G_092

Geometric discrepancy: 0.4652

The information below is about HL_9H3G_092

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_34080.1

Basepair signature

cWW-cWH-F

Number of instances in this motif group

4

Unit IDs

6YBW|1|A|C|833
6YBW|1|A|C|834
6YBW|1|A|C|835
6YBW|1|A|G|836
6YBW|1|A|A|837
6YBW|1|A|G|838
6YBW|1|A|C|839
6YBW|1|A|C|840
6YBW|1|A|G|841

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24