HL_6YBW_026

3D structure

PDB id

6YBW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a human 48S translational initiation complex - 40S body

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCCCGCCGGGGGCCCUGGCGGAGCG

Length

25 nucleotides

Bulged bases

6YBW|1|A|C|1753, 6YBW|1|A|C|1774, 6YBW|1|A|C|1783

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YBW|1|A|C|1750
6YBW|1|A|C|1751
6YBW|1|A|C|1752
6YBW|1|A|C|1753
6YBW|1|A|G|1754
6YBW|1|A|C|1755
6YBW|1|A|C|1756
6YBW|1|A|G|1757
6YBW|1|A|G|1758
6YBW|1|A|G|1759
6YBW|1|A|G|1760
6YBW|1|A|G|1771
6YBW|1|A|C|1772
6YBW|1|A|C|1773
6YBW|1|A|C|1774
6YBW|1|A|U|1775
6YBW|1|A|G|1776
6YBW|1|A|G|1777
6YBW|1|A|C|1778
6YBW|1|A|G|1779
6YBW|1|A|G|1780
6YBW|1|A|A|1781
6YBW|1|A|G|1782
6YBW|1|A|C|1783
6YBW|1|A|G|1784

Current chains

Chain A

18S rRNA

Nearby chains

Chain S

40S ribosomal protein S6