HL_6YDW_011
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAUUAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 6YDW|1|AA|U|433
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_011 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.1907
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6YDW|1|AA|G|426
6YDW|1|AA|A|427
6YDW|1|AA|U|428
6YDW|1|AA|U|429
6YDW|1|AA|A|430
6YDW|1|AA|G|431
6YDW|1|AA|A|432
6YDW|1|AA|U|433
6YDW|1|AA|A|434
6YDW|1|AA|C|435
6YDW|1|AA|C|436
Current chains
- Chain AA
- 12S rRNA
Nearby chains
- Chain AK
- uS11m
- Chain AU
- bS21m
- Chain AV
- tRNAMet
- Chain AX
- mRNA
- Chain AY
- tRNAMet
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
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