HL_6YDW_014

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GAUAAACCCC

Length

10 nucleotides

Bulged bases

6YDW|1|AA|C|576

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_014 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1636

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YDW|1|AA|G|568
6YDW|1|AA|A|569
6YDW|1|AA|U|570
6YDW|1|AA|A|571
6YDW|1|AA|A|572
6YDW|1|AA|A|573
6YDW|1|AA|C|574
6YDW|1|AA|C|575
6YDW|1|AA|C|576
6YDW|1|AA|C|577

Current chains

Chain AA

12S rRNA

Nearby chains

Chain AI

Uncharacterized protein

Chain AJ

Mitochondrial ribosomal protein S10

Chain AV

tRNAMet

Chain AY

tRNAMet