HL_6YDW_021

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAACCUAUA

Length

9 nucleotides

Bulged bases

6YDW|1|AA|C|884, 6YDW|1|AA|U|885

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_021 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.378

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

6YDW|1|AA|U|880
6YDW|1|AA|A|881
6YDW|1|AA|A|882
6YDW|1|AA|C|883
6YDW|1|AA|C|884
6YDW|1|AA|U|885
6YDW|1|AA|A|886
6YDW|1|AA|U|887
6YDW|1|AA|A|888

Current chains

Chain AA

12S rRNA

Nearby chains

Chain Ae

Mitochondrial ribosomal protein S27

Chain Aj

mS34