HL_6YDW_027
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GCCCAUACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_027 not in the Motif Atlas
- Geometric match to HL_4TUE_034
- Geometric discrepancy: 0.1375
- The information below is about HL_4TUE_034
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6YDW|1|AY|G|28
6YDW|1|AY|C|29
6YDW|1|AY|C|30
6YDW|1|AY|C|31
6YDW|1|AY|A|32
6YDW|1|AY|U|33
6YDW|1|AY|A|34
6YDW|1|AY|C|35
6YDW|1|AY|C|36
Current chains
- Chain AY
- tRNAMet
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AG
- Mitochondrial ribosomal protein S7
- Chain AI
- Uncharacterized protein
- Chain AK
- uS11m
- Chain AV
- tRNAMet
- Chain AX
- mRNA
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