HL_6YDW_037

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

6YDW|1|BA|A|328

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_037 not in the Motif Atlas

Geometric match to HL_4V9F_025

Geometric discrepancy: 0.2809

The information below is about HL_4V9F_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79773.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

8

Unit IDs

6YDW|1|BA|U|326
6YDW|1|BA|G|327
6YDW|1|BA|A|328
6YDW|1|BA|A|329
6YDW|1|BA|A|330
6YDW|1|BA|A|331
6YDW|1|BA|G|332

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

Uncharacterized protein

Chain Bi

Mitochondrial ribosomal protein L45