HL_6YDW_040

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGUACAGC

Length

8 nucleotides

Bulged bases

6YDW|1|BA|A|445, 6YDW|1|BA|G|448

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_040 not in the Motif Atlas

Geometric match to HL_7A0S_026

Geometric discrepancy: 0.1707

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

6YDW|1|BA|G|442
6YDW|1|BA|G|443
6YDW|1|BA|U|444
6YDW|1|BA|A|445
6YDW|1|BA|C|446
6YDW|1|BA|A|447
6YDW|1|BA|G|448
6YDW|1|BA|C|449

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BJ

Mitochondrial ribosomal protein L10

Chain BQ

Uncharacterized protein

Chain Bt

Mitochondrial ribosomal protein L57