HL_6YDW_042

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CCUAAAAGCAG

Length

11 nucleotides

Bulged bases

6YDW|1|BA|A|515

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_042 not in the Motif Atlas

Geometric match to HL_5J7L_161

Geometric discrepancy: 0.3036

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6YDW|1|BA|C|509
6YDW|1|BA|C|510
6YDW|1|BA|U|511
6YDW|1|BA|A|512
6YDW|1|BA|A|513
6YDW|1|BA|A|514
6YDW|1|BA|A|515
6YDW|1|BA|G|516
6YDW|1|BA|C|517
6YDW|1|BA|A|518
6YDW|1|BA|G|519

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BC

Elongation factor G, mitochondrial

Chain BK

Mitochondrial ribosomal protein L11

Chain Bq

Uncharacterized protein