HL_6YDW_048
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CAACACAG
- Length
- 8 nucleotides
- Bulged bases
- 6YDW|1|BA|A|762, 6YDW|1|BA|A|764, 6YDW|1|BA|A|766
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_048 not in the Motif Atlas
- Geometric match to HL_1WZ2_007
- Geometric discrepancy: 0.1004
- The information below is about HL_1WZ2_007
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.9
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 24
Unit IDs
6YDW|1|BA|C|760
6YDW|1|BA|A|761
6YDW|1|BA|A|762
6YDW|1|BA|C|763
6YDW|1|BA|A|764
6YDW|1|BA|C|765
6YDW|1|BA|A|766
6YDW|1|BA|G|767
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B7
- Mitochondrial ribosomal protein L34
- Chain BW
- Uncharacterized protein
- Chain BX
- Uncharacterized protein
- Chain Be
- Mitochondrial ribosomal protein L41
- Chain Bi
- Mitochondrial ribosomal protein L45
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