HL_6YDW_051

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

CACCAG

Length

6 nucleotides

Bulged bases

6YDW|1|BA|C|889

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_051 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.345

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

6YDW|1|BA|C|887
6YDW|1|BA|A|888
6YDW|1|BA|C|889
6YDW|1|BA|C|890
6YDW|1|BA|A|891
6YDW|1|BA|G|892

Current chains

Chain BA

12S rRNA

Nearby chains

Chain BD

Uncharacterized protein