HL_6YDW_054
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUGAAGAGGC
- Length
- 10 nucleotides
- Bulged bases
- 6YDW|1|BA|A|1025, 6YDW|1|BA|A|1026, 6YDW|1|BA|G|1027
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_054 not in the Motif Atlas
- Geometric match to HL_4WF9_047
- Geometric discrepancy: 0.1571
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YDW|1|BA|G|1022
6YDW|1|BA|U|1023
6YDW|1|BA|G|1024
6YDW|1|BA|A|1025
6YDW|1|BA|A|1026
6YDW|1|BA|G|1027
6YDW|1|BA|A|1028
6YDW|1|BA|G|1029
6YDW|1|BA|G|1030
6YDW|1|BA|C|1031
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B5
- Uncharacterized protein
- Chain BE
- ICT1
- Chain BV
- Mitochondrial ribosomal protein L21
- Chain Bt
- Mitochondrial ribosomal protein L57
- Chain Bx
- Mitochondrial ribosomal protein S18A
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