HL_6YDW_061

3D structure

PDB id

6YDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UGCAACCG

Length

8 nucleotides

Bulged bases

6YDW|1|BA|G|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YDW_061 not in the Motif Atlas

Geometric match to HL_4WF9_057

Geometric discrepancy: 0.2318

The information below is about HL_4WF9_057

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

6YDW|1|BA|U|1351
6YDW|1|BA|G|1352
6YDW|1|BA|C|1353
6YDW|1|BA|A|1354
6YDW|1|BA|A|1355
6YDW|1|BA|C|1356
6YDW|1|BA|C|1357
6YDW|1|BA|G|1358

Current chains

Chain BA

12S rRNA

Nearby chains

Chain B9

Ribosomal protein

Chain BC

Elongation factor G, mitochondrial