HL_6YDW_066
3D structure
- PDB id
- 6YDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- AAUGAUUUAAUCUUAACCU
- Length
- 19 nucleotides
- Bulged bases
- 6YDW|1|BA|U|1521, 6YDW|1|BA|C|1525, 6YDW|1|BA|U|1527
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YDW_066 not in the Motif Atlas
- Geometric match to HL_7A0S_074
- Geometric discrepancy: 0.3879
- The information below is about HL_7A0S_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_28904.1
- Basepair signature
- cWW-F-F-tWH-cWH-tSH-tHW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
6YDW|1|BA|A|1514
6YDW|1|BA|A|1515
6YDW|1|BA|U|1516
6YDW|1|BA|G|1517
6YDW|1|BA|A|1518
6YDW|1|BA|U|1519
6YDW|1|BA|U|1520
6YDW|1|BA|U|1521
6YDW|1|BA|A|1522
6YDW|1|BA|A|1523
6YDW|1|BA|U|1524
6YDW|1|BA|C|1525
6YDW|1|BA|U|1526
6YDW|1|BA|U|1527
6YDW|1|BA|A|1528
6YDW|1|BA|A|1529
6YDW|1|BA|C|1530
6YDW|1|BA|C|1531
6YDW|1|BA|U|1532
Current chains
- Chain BA
- 12S rRNA
Nearby chains
- Chain B9
- Ribosomal protein
- Chain BN
- Uncharacterized protein
- Chain Bp
- mL53
- Chain Bx
- Mitochondrial ribosomal protein S18A
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