HL_6YEF_006

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

6YEF|1|A|A|199

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_006 not in the Motif Atlas

Geometric match to HL_7RQB_006

Geometric discrepancy: 0.11

The information below is about HL_7RQB_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06192.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

14

Unit IDs

6YEF|1|A|G|197
6YEF|1|A|A|198
6YEF|1|A|A|199
6YEF|1|A|A|200
6YEF|1|A|C|201
6YEF|1|A|A|202
6YEF|1|A|U|203
6YEF|1|A|C|204

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

50S ribosomal protein L28

Chain O

50S ribosomal protein L15