HL_6YEF_008

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_008 not in the Motif Atlas

Homologous match to HL_7RQB_008

Geometric discrepancy: 0.0909

The information below is about HL_7RQB_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67216.7

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

9

Unit IDs

6YEF|1|A|C|249
6YEF|1|A|G|250
6YEF|1|A|G|251
6YEF|1|A|C|252
6YEF|1|A|G|253
6YEF|1|A|A|254
6YEF|1|A|G|255

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L35

Chain O

50S ribosomal protein L15