HL_6YEF_014

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

6YEF|1|A|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_014 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0975

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

6YEF|1|A|G|456
6YEF|1|A|G|457
6YEF|1|A|A|458
6YEF|1|A|C|459
6YEF|1|A|C|460
6YEF|1|A|A|461
6YEF|1|A|U|462
6YEF|1|A|C|463

Current chains

Chain A

23S rRNA

Nearby chains