HL_6YEF_021

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UGAAUAG

Length

7 nucleotides

Bulged bases

6YEF|1|A|U|690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_021 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.1346

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6YEF|1|A|U|686
6YEF|1|A|G|687
6YEF|1|A|A|688
6YEF|1|A|A|689
6YEF|1|A|U|690
6YEF|1|A|A|691
6YEF|1|A|G|692

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L33 2

Chain 7

50S ribosomal protein L35