3D structure

PDB id
6YEF (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
Experimental method
ELECTRON MICROSCOPY
Resolution
3.2 Å

Loop

Sequence
GGGCCCCUCGGGUAC
Length
15 nucleotides
Bulged bases
6YEF|1|A|C|935
QA status
Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6YEF|1|A|G|925
6YEF|1|A|G|926
6YEF|1|A|G|927
6YEF|1|A|C|928
6YEF|1|A|C|929
6YEF|1|A|C|930
6YEF|1|A|C|931
6YEF|1|A|U|932
6YEF|1|A|C|935
6YEF|1|A|G|936
6YEF|1|A|G|937
6YEF|1|A|G|938
6YEF|1|A|U|939
6YEF|1|A|A|941
6YEF|1|A|C|942

Current chains

Chain A
23S rRNA

Nearby chains

Chain m
30S ribosomal protein S13

Coloring options:

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