HL_6YEF_029

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GCUUAGAAGCAGC

Length

13 nucleotides

Bulged bases

6YEF|1|A|A|1114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_029 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2933

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6YEF|1|A|G|1107
6YEF|1|A|C|1108
6YEF|1|A|U|1109
6YEF|1|A|U|1110
6YEF|1|A|A|1111
6YEF|1|A|G|1112
6YEF|1|A|A|1113
6YEF|1|A|A|1114
6YEF|1|A|G|1115
6YEF|1|A|C|1116
6YEF|1|A|A|1117
6YEF|1|A|G|1118
6YEF|1|A|C|1119

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16