HL_6YEF_031

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_031 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.0895

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

6YEF|1|A|C|1260
6YEF|1|A|G|1261
6YEF|1|A|U|1262
6YEF|1|A|A|1263
6YEF|1|A|A|1264
6YEF|1|A|G|1265

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15

Chain T

50S ribosomal protein L20

Chain U

50S ribosomal protein L21