HL_6YEF_032

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.0968

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

6YEF|1|A|G|1318
6YEF|1|A|U|1319
6YEF|1|A|G|1320
6YEF|1|A|A|1321
6YEF|1|A|G|1322
6YEF|1|A|A|1323
6YEF|1|A|A|1324
6YEF|1|A|U|1325
6YEF|1|A|C|1326

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22