HL_6YEF_048
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 6YEF|1|A|A|2057, 6YEF|1|A|A|2058, 6YEF|1|A|G|2059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_048 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.128
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
6YEF|1|A|G|2054
6YEF|1|A|U|2055
6YEF|1|A|G|2056
6YEF|1|A|A|2057
6YEF|1|A|A|2058
6YEF|1|A|G|2059
6YEF|1|A|A|2060
6YEF|1|A|U|2061
6YEF|1|A|G|2062
6YEF|1|A|C|2063
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 4
- 50S ribosomal protein L32
- Chain E
- 50S ribosomal protein L3
- Chain U
- 50S ribosomal protein L21
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