HL_6YEF_049

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUUUGAAACGUGAGCGCUAGCUUACGUGGAG

Length

31 nucleotides

Bulged bases

6YEF|1|A|U|2158, 6YEF|1|A|U|2159, 6YEF|1|A|C|2172, 6YEF|1|A|U|2173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|C|2156
6YEF|1|A|U|2157
6YEF|1|A|U|2158
6YEF|1|A|U|2159
6YEF|1|A|G|2160
6YEF|1|A|A|2161
6YEF|1|A|A|2162
6YEF|1|A|A|2163
6YEF|1|A|C|2164
6YEF|1|A|G|2165
6YEF|1|A|U|2166
6YEF|1|A|G|2167
6YEF|1|A|A|2168
6YEF|1|A|G|2169
6YEF|1|A|C|2170
6YEF|1|A|G|2171
6YEF|1|A|C|2172
6YEF|1|A|U|2173
6YEF|1|A|A|2174
6YEF|1|A|G|2175
6YEF|1|A|C|2176
6YEF|1|A|U|2177
6YEF|1|A|U|2178
6YEF|1|A|A|2179
6YEF|1|A|C|2180
6YEF|1|A|G|2181
6YEF|1|A|U|2182
6YEF|1|A|G|2183
6YEF|1|A|G|2184
6YEF|1|A|A|2185
6YEF|1|A|G|2186

Current chains

Chain A

23S rRNA

Nearby chains