HL_6YEF_051

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6YEF|1|A|G|2277

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_051 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0978

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6YEF|1|A|C|2275
6YEF|1|A|U|2276
6YEF|1|A|G|2277
6YEF|1|A|OMG|2278
6YEF|1|A|G|2279
6YEF|1|A|G|2280
6YEF|1|A|C|2281
6YEF|1|A|G|2282
6YEF|1|A|G|2283

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27

Chain x

Transfer RNA; tRNA