HL_6YEF_052

3D structure

PDB id

6YEF (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUAAAAGGUAACG

Length

13 nucleotides

Bulged bases

6YEF|1|A|A|2295, 6YEF|1|A|C|2302

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6YEF_052 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.0764

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

6YEF|1|A|C|2291
6YEF|1|A|U|2292
6YEF|1|A|A|2293
6YEF|1|A|A|2294
6YEF|1|A|A|2295
6YEF|1|A|A|2296
6YEF|1|A|G|2297
6YEF|1|A|G|2298
6YEF|1|A|U|2299
6YEF|1|A|A|2300
6YEF|1|A|A|2301
6YEF|1|A|C|2302
6YEF|1|A|G|2303

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Z

50S ribosomal protein L27