HL_6YEF_054
3D structure
- PDB id
- 6YEF (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S initiation complex with assigned rRNA modifications from Staphylococcus aureus
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UGUAAAGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6YEF_054 not in the Motif Atlas
- Homologous match to HL_4WF9_052
- Geometric discrepancy: 0.1388
- The information below is about HL_4WF9_052
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_52651.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 27
Unit IDs
6YEF|1|A|U|2351
6YEF|1|A|G|2352
6YEF|1|A|U|2353
6YEF|1|A|A|2354
6YEF|1|A|A|2355
6YEF|1|A|A|2356
6YEF|1|A|G|2357
6YEF|1|A|G|2358
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L5
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
- Chain x
- Transfer RNA; tRNA
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